Auto Payments and manual payments work together in Guesty.
For example, if Auto Payments are set to collect 50% on confirmation and 50% at check-in, the full balance is covered, which prevents additional payments (manual or Auto). If extra fees, like a pet fee, are added, further payments can be scheduled.
However, if you have already scheduled manual payments for a reservation, you won't be able to add Auto Payments for that same reservation.
Note:
In some cases, Auto Payments are treated as manual payments. If you edited scheduled Auto Payments or canceled scheduled Auto Payments, they are no longer recognized as Auto Payment reservations. Moreover, any alterations made to Auto Payment rules won't apply to these reservations retroactively.